# ========= [INFO] ==========
# Mut inCB: not accepter mutation in BC
# Mut inMS: 2
# ReadIn  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.seq
# seq_deb : ACAGGTG
# seq_fin : TATGG
# MS_seq : AC
# excl : G,T
# nom  : AC25
# log  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.log
# =============================
#
# condiGrep: ACAG.TG.+.ATGG|ACAG.TG.+T.TGG|ACAG.TG.+TA.GG|ACAG.TG.+TAT.G|ACAG.TG.+TATG.|ACAGG.G.+.ATGG|ACAGG.G.+T.TGG|ACAGG.G.+TA.GG|ACAGG.G.+TAT.G|ACAGG.G.+TATG.|ACAGGT..+.ATGG|ACAGGT..+T.TGG|ACAGGT..+TA.GG|ACAGGT..+TAT.G|ACAGGT..+TATG.
# condiSet1: s/^.*ACAG.TG//g;s/^.*ACAGG.G//g;s/^.*ACAGGT.//g
# condiSet2: s/.ATGG.*$//g;s/T.TGG.*$//g;s/TA.GG.*$//g;s/TAT.G.*$//g;s/TATG..*$//g
# Pre-filtre ExactEnd: 79199 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.exactEachEnd.MS
# Pre-filtre MutInEnd: 0 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.Max1MutEachEnd.MS
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.MS.all ] 79143 lines.
#
#> SophieMS_GenotyperMS_unProfil.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.MS.all.nb AC
#> SophieMS_GenotyperMS_unProfil_v2.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.exactEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.exactEachEnd.MS.MS_Mut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.Max1MutEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.Max1MutEachEnd.MS.MS_Mut.nb  AC  /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.MS
# =============[ END ]===========
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.MS.all.nb ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.MS.all.profil.png ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1008_AT15AC25/Q20_P3_bc1008_AT15AC25.bam.AC25.seq.MS.profil_v2.png ]
#
#nbRead	nbMSall	nb_EndnoMut_MSnoMut	nb_EndnoMut_MSMut	nb_EndMut_MSnoMut	nb_EndMut_MSMut
277989	79143	78793	350	0	0
